Bi/CNS/NB 150
Introduction to Neuroscience
10 units (4-0-6)
|
first term
Prerequisites: Bi 8, 9, or instructors' permission.
General principles of the function and organization of nervous systems, providing both an overview of the subject and a foundation for advanced courses. Topics include the physical and chemical bases for action potentials, synaptic transmission, and sensory transduction; anatomy; development; sensory and motor pathways; memory and learning at the molecular, cellular, and systems level; and the neuroscience of brain diseases.
Instructors:
Adolphs, Lester
Bi/CNS/NB 153
Brain Circuits
9 units (3-0-6)
|
second term
Prerequisites: Bi/CNS/NB 150 or equivalent.
What functions arise when many thousands of neurons combine in a densely connected circuit? Though the operations of neural circuits lie at the very heart of brain science, our textbooks have little to say on the topic. Through an alternation of lecture and discussion this course explores the empirical observations in this field and the analytical approaches needed to make sense of them. We begin with a foray into sensory and motor systems, consider what basic functions they need to accomplish, and examine what neural circuits are involved. Next we explore whether the circuit motifs encountered are also found in central brain areas, with an emphasis on sensory-motor integration and learning. Finally we discuss design principles for neural circuits and what constraints have shaped their structure and function in the course of evolution. Given in alternate years; offered 2014-15.
Instructor:
Meister
CS/CNS/EE/NB 154
Artificial Intelligence
9 units (3-3-3)
|
first term
Prerequisites: Ma 2 b or equivalent, and CS 1 or equivalent.
How can we build systems that perform well in unk nown environments and unforeseen situations? How can we develop systems that exhibit "intelligent" behavior, without prescribing explicit rules? How can we build systems that learn from experience in order to improve their performance? We will study core modeling techniques and algorithms from statistics, optimization, planning, and control and study applications in areas such as sensor networks, robotics, and the Internet. The course is designed for upper-level undergraduate and graduate students. Not offered 2014-15.
Bi/NB/BE 155
Neuropharmacology
6 units (3-0-3)
|
second term
Prerequisites: Bi/CNS/NB 150 or Bi/NB 202.
The neuroscience of drugs for therapy, for prevention, and for recreation. Students learn the prospects for new generations of medications in neurology, psychiatry, aging, and treatment of substance abuse. Topics: Types of drug molecules. Drug receptors. Electrophysiology. Drugs activate ion channels. Drugs block ion channels. Drugs activate and block G protein pathways. Drugs block neurotransmitter transporters. Pharmacokinetics. Recreational drugs. Nicotine Addiction. Opiate Addiction. Drugs for neurodegenerative diseases: Alzheimer's disease, Parkinson's disease. Drugs for epilepsy and migraine. Psychiatric diseases: nosology and drugs. The course is taught at the research level. Given in alternate years, offered beginning 2014-15.
Instructor:
Lester
Bi/NB 156
Molecular Basis of Behavior
9 units (3-0-6)
|
second term
Prerequisites: Bi/CNS/NB 150 or instructor's permission.
A lecture and discussion course on the neurobiology of behavior. Topics may include biological clocks, eating behavior, sexual behavior, addiction, mental illness, and neurodegenerative diseases. Given in alternate years; not offered 2014-15.
Instructor:
Staff
Bi/CNS/NB 157
Comparative Nervous Systems
9 units (2-3-4)
|
third term
Prerequisites: instructor's permission.
An introduction to the comparative study of the gross and microscopic structure of nervous systems. Emphasis on the vertebrate nervous system; also, the highly developed central nervous systems found in arthropods and cephalopods. Variation in nervous system structure with function and with behavioral and ecological specializations and the evolution of the vertebrate brain. Letter grades only. Given in alternate years; offered 2014-15.
Instructor:
Allman
Bi/CNS/NB 162
Cellular and Systems Neuroscience Laboratory
12 units (2-7-3)
|
third term
Prerequisites: Bi/CNS/NB 150 or instructor's permission.
A laboratory-based introduction to experimental methods used for electrophysiological studies of the central nervous system. Through the term, students investigate the physiological response properties of neurons in insect and mammalian brains, using extra- and intracellular recording techniques. Students are instructed in all aspects of experimental procedures, including proper surgical techniques, electrode fabrication, stimulus presentation, and computer-based data analysis. Graded pass/fail.
Instructor:
Staff
Bi/CNS/NB 164
Tools of Neurobiology
9 units (3-0-6)
|
second term
Prerequisites: Bi/CNS/NB 150 or equivalent.
Offers a broad survey of methods and approaches to understanding in modern neurobiology. The focus is on understanding the tools of the discipline, and their use will be illustrated with current research results. Topics include: molecular genetics, disease models, transgenic and knock-in technology, virus tools, tracing methods, gene profiling, light and electron microscopy, optogenetics, optical and electrical recording, neural coding, quantitative behavior, modeling and theory.
Instructor:
Meister
CNS/Bi/SS/Psy/NB 176
Cognition
12 units (6-0-6)
|
third term
The cornerstone of current progress in understanding the mind, the brain, and the relationship between the two is the study of human and animal cognition. This course will provide an in-depth survey and analysis of behavioral observations, theoretical accounts, computational models, patient data, electrophysiological studies, and brain-imaging results on mental capacities such as attention, memory, emotion, object representation, language, and cognitive development. Offered 2014-15.
Instructor:
Shimojo
Bi/CNS/NB 184
The Primate Visual System
9 units (3-1-5)
|
third term
This class focuses on the primate visual system, investigating it from an experimental, psychophysical, and computational perspective. The course will focus on two essential problems: 3-D vision and object recognition. Topics include parallel processing pathways, functional specialization, prosopagnosia, object detection and identification, invariance, stereopsis, surface perception, scene perception, navigation, visual memory, multidimensional readout, signal detection theory, oscillations, and synchrony. It will examine how a visual stimulus is represented starting in the retina, and ending in the frontal lobe, with a special emphasis placed on mechanisms for high-level vision in the parietal and temporal lobes. The course will include a lab component in which students design and analyze their own fMRI experiment. Given in alternate years; offered 2014-15.
Instructor:
Tsao
Bi/CNS/NB 185
Large Scale Brain Networks
6 units (2-0-4)
|
third term
This class will focus on understanding what is known about the large-scale organization of the brain, focusing on the mammalian brain. What large scale brain networks exist and what are their principles of function? How is information flexibly routed from one area to another? What is the function of thalamocortical loops? We will examine large scale networks revealed by anatomical tracing, functional connectivity studies, and mRNA expression analyses, and explore the brain circuits mediating complex behaviors such as attention, memory, sleep, multisensory integration, decision making, and object vision. While each of these topics could cover an entire course in itself, our focus will be on understanding the master plan--how the components of each of these systems are put together and function as a whole. A key question we will delve into, from both a biological and a theoretical perspective, is: how is information flexibly routed from one brain area to another? We will discuss the communication through coherence hypothesis, small world networks, and sparse coding. Given in alternate years, not offered 2014-15.
Instructor:
Tsao
CNS/Bi/Ph/CS/NB 187
Neural Computation
9 units (3-0-6)
|
first term
Prerequisites: familiarity with digital circuits, probability theory, linear algebra, and differential equations. Programming will be required.
This course investigates computation by neurons. Of primary concern are models of neural computation and their neurological substrate, as well as the physics of collective computation. Thus, neurobiology is used as a motivating factor to introduce the relevant algorithms. Topics include rate-code neural networks, their differential equations, and equivalent circuits; stochastic models and their energy functions; associative memory; supervised and unsupervised learning; development; spike-based computing; single-cell computation; error and noise tolerance.
Instructor:
Perona
Bi/CNS/NB 195
Mathematics in Biology
9 units (3-0-6)
|
second term
Prerequisites: Multi-variable calculus.
This course develops the mathematical methods needed for a quantitative understanding of biological phenomena, including data analysis, formulation of simple models, and the framing of quantitative questions. Topics include: probability and stochastic processes, linear algebra and transforms, dynamical systems, MATLAB programming. Given in alternate years; not offered 2014-15.
Instructor:
Meister
Bi/NB 202
Neurobiology of Disease
9 units (3-0-6)
|
first term
Prerequisites: Bi/CNS/NB 150 or instructor's permission.
This course will cover the cellular and molecular basis of diseases of the nervous system, as well as current and future therapeutic approaches. These diseases include disorders of abnormal protein structure (Alzheimer's, Huntington's, Parkinson's, prion), autoimmunity (multiple sclerosis), developmental disorders of cognition and social communication (schizophrenia, autism, Fragile X, Rett syndrome), epilepsy, stroke and depression. Genetic and environmental etiologies will be explored, and animal models will be compared to the human condition. The role of the reward system in addiction will also be discussed. Given in alternate years; not offered 2014-15.
Instructor:
Staff
Bi/CNS/NB 216
Behavior of Mammals
6 units (2-0-4)
|
first term
A course of lectures, readings, and discussions focused on the genetic, physiological, and ecological bases of behavior in mammals. A basic knowledge of neuroanatomy and neurophysiology is desirable. Given in alternate years; not offered 2014-15.
Instructor:
Allman
Bi/CNS/NB 217
Central Mechanisms in Perception
6 units (2-0-4)
|
first term
Reading and discussions of behavioral and electrophysiological studies of the systems for the processing of sensory information in the brain. Given in alternate years; offered 2014-15.
Instructor:
Allman
Bi/CNS/NB 220
Genetic Dissection of Neural Circuit Function
6 units (2-0-4)
|
second term
This advanced course will discuss the emerging science of neural "circuit breaking" through the application of molecular genetic tools. These include optogenetic and pharmacogenetic manipulations of neuronal activity, genetically based tracing of neuronal connectivity, and genetically based indicators of neuronal activity. Both viral and transgenic approaches will be covered, and examples will be drawn from both the invertebrate and vertebrate literature. Interested students who have little or no familiarity with molecular biology will be supplied with the necessary background information. Lectures and student presentations from the current literature.
Instructor:
Anderson
Bi/CNS/BE/NB 230
Optogenetic Methods in Experimental Neuroscience
9 units (3-1-5)
|
third term
Prerequisites: Graduate standing or Bi/CNS/NB 150 and instructor permission.
The class covers the theoretical and practical aspects of optogenetic control and complementary readout methods in molecular, cellular, and systems neuroscience. Topics include opsin design (including natural and artificial sources), delivery (genetic targeting, viral transduction), light activation requirements (power requirements, wavelength, fiberoptics, LEDs), compatible readout modalities (electrophysiology, imaging) and applications to neuronal circuits (case studies based on recent literature). The class offers hands-on lab exposure for opsin delivery to the mammalian brain and recording of brain activity modulated by light.
Instructor:
Gradinaru
CNS/Bi/NB 247
Cerebral Cortex
6 units (2-0-4)
|
second term
Prerequisites: Bi/CNS/NB 150 or equivalent.
A general survey of the structure and function of the cerebral cortex. Topics include cortical anatomy, functional localization, and newer computational approaches to understanding cortical processing operations. Motor cortex, sensory cortex (visual, auditory, and somatosensory cortex), association cortex, and limbic cortex. Emphasis is on using animal models to understand human cortical function and includes correlations between animal studies and human neuropsychological and functional imaging literature. Given in alternate years; offered 2014-15.
Instructor:
Andersen
Bi/CNS/NB 250 c
Topics in Systems Neuroscience
9 units (3-0-6)
|
third term
Prerequisites: graduate standing.
The class focuses on quantitative studies of problems in systems neuroscience. Students will study classical work such as Hodgkin and Huxley's landmark papers on the ionic basis of the action potential, and will move from the study of interacting currents within neurons to the study of systems of interacting neurons. Topics will include lateral inhibition, mechanisms of motion tuning, local learning rules and their consequences for network structure and dynamics, oscillatory dynamics and synchronization across brain circuits, and formation and computational properties of topographic neural maps. The course will combine lectures and discussions, in which students and faculty will examine papers on systems neuroscience, usually combining experimental and theoretical/modeling components.
Instructor:
Siapas
CNS/Bi/NB 256
Decision Making
6 units (2-0-4)
|
third term
This special topics course will examine the neural mechanisms of reward, decision making, and reward-based learning. The course covers the anatomy and physiology of reward and action systems. Special emphasis will be placed on the representation of reward expectation; the interplay between reward, motivation, and attention; and the selection of actions. Links between concepts in economics and the neural mechanisms of decision making will be explored. Data from animal and human studies collected using behavioral, neurophysiological, and functional magnetic resonance techniques will be reviewed. Given in alternate years; not offered 2014-15.
Published Date:
July 28, 2022